Hedge February 2012

hedge@tiker.net

4 participants
4 discussions

by Andreas Kloeckner

Hi Peter, On Wed, 22 Feb 2012 16:53:16 +0100, Peter17 <peter017(a)gmail.com> wrote: > I would like to adapt the Laplacian and Diffusion operators for my own > usage, but I can't make the corresponding examples work in MPI... > > For examples heat/heat.py, poisson/poisson.py and > poisson/helmholtz.py, If I replace: > rcon = guess_run_context() > by > rcon = guess_run_context(['mpi']) > > And run: > mpirun -n 2 python heat.py Thanks for the report. I'll look into it, but I'll be traveling for another week and a half--so it might be a little while. Andreas

8 years, 4 months

Examples not working in MPI

by Peter17

Dear Andreas, I would like to adapt the Laplacian and Diffusion operators for my own usage, but I can't make the corresponding examples work in MPI... For examples heat/heat.py, poisson/poisson.py and poisson/helmholtz.py, If I replace: rcon = guess_run_context() by rcon = guess_run_context(['mpi']) And run: mpirun -n 2 python heat.py Then, I get the following error: Traceback (most recent call last): File "heat.py", line 165, in <module> main() File "heat.py", line 131, in main rhs = op.bind(discr) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/models/diffusion.py", line 66, in bind return BoundDiffusionOperator(self, discr) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/models/diffusion.py", line 98, in __init__ self.compiled_op = discr.compile(op) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/backends/mpi/__init__.py", line 637, in compile type_hints=type_hints) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/discretization/__init__.py", line 1324, in compile type_hints) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/backends/jit/__init__.py", line 335, in __init__ post_bind_mapper, type_hints) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/backends/jit/__init__.py", line 404, in compile_optemplate return OperatorCompiler(discr)(optemplate, type_hints) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/compiler.py", line 652, in __call__ result = IdentityMapper.__call__(self, expr) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 189, in map_sum self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 189, in <genexpr> self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/compiler.py", line 719, in map_common_subexpression expr.child, name_hint=expr.prefix) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/backends/jit/compiler.py", line 178, in map_operator_binding self, expr, name_hint=name_hint) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/compiler.py", line 746, in map_operator_binding self.rec(expr.field)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 194, in map_product self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 194, in <genexpr> self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 189, in map_sum self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 189, in <genexpr> self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/backends/jit/compiler.py", line 175, in map_operator_binding return self.map_planned_flux(expr) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/compiler.py", line 848, in map_planned_flux for f in fb.flux_exprs] File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/backends/jit/compiler.py", line 170, in internal_map_flux return IdentityMapper.map_operator_binding(self, flux_bind) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/optemplate/mappers/__init__.py", line 163, in map_operator_binding self.rec(expr.field, *args, **kwargs)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/optemplate/mappers/__init__.py", line 172, in map_boundary_pair self.rec(expr.bfield, *args, **kwargs), File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 40, in __call__ return self.map_foreign(expr, *args) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 70, in map_foreign return self.map_numpy_array(expr, *args) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 223, in map_numpy_array result[i] = self.rec(expr[i]) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/compiler.py", line 826, in map_flux_exchange arg_fields=[self.rec(arg_field) for arg_field in fe.arg_fields], File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/compiler.py", line 721, in map_common_subexpression rec_child = self.rec(expr.child) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 189, in map_sum self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 189, in <genexpr> self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/compiler.py", line 719, in map_common_subexpression expr.child, name_hint=expr.prefix) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/backends/jit/compiler.py", line 178, in map_operator_binding self, expr, name_hint=name_hint) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/compiler.py", line 746, in map_operator_binding self.rec(expr.field)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 189, in map_sum self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 189, in <genexpr> self.rec(child, *args) for child in expr.children)) File "/usr/local/lib/python2.6/dist-packages/pymbolic-2010.1-py2.6.egg/pymbolic/mapper/__init__.py", line 42, in __call__ return method(expr, *args) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/backends/jit/compiler.py", line 175, in map_operator_binding return self.map_planned_flux(expr) File "/usr/local/lib/python2.6/dist-packages/hedge-0.91-py2.6-linux-x86_64.egg/hedge/compiler.py", line 861, in map_planned_flux raise RuntimeError("flux '%s' not in any flux batch" % expr) RuntimeError: flux '<Flux((-1)*(Normal(0)*Int[0] + (-1)*Normal(0)*CSE(0.5*(Int[0] + Ext[0]))))>(u)' not in any flux batch However, these examples are working very well in CPU and (except helmholtz.py) single GPU... Other examples such as advection/advection.py and wave/wave.py are working well in CPU and MPI... Can you please have a look at them? Thanks a lot in advance Best regards -- Peter Potrowl

8 years, 4 months

Re: [Hedge] TypeError: argument of type 'int' is not iterable

by Andreas Kloeckner

On Tue, 14 Feb 2012 09:09:24 +0100, "Moulin Emmanuel" <Emmanuel.Moulin(a)univ-valenciennes.fr> wrote: Non-text part: text/html > Not sure I understand what you mean... I simply let the "pymbolic" module install itself through the git commands indicated on your wiki : > > 1. git clone http://git.tiker.net/trees/repotool.git src > > 2. src ./repotool clone http://git.tiker.net/trees/ .git No--try $ cd pymbolic $ git pull git://github.com/inducer/pymbolic master $ python setup.py develop (while the env is active) (Btw, please keep the list cc'd) Andreas

8 years, 5 months

TypeError: argument of type 'int' is not iterable

by Moulin Emmanuel

8 years, 5 months

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Hedge February 2012